rs51893748 SNP Detail

Summary

• ID
  rs51893748
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121404441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGAGCA TGGGGAGGGA
  CGAGTGCCTT CCTTTTCCTG CTGTACACTC TGGGCTGATA TTTAAGTCAA AGCAGAGAGA
  CAGTACAACT GACCCTGTTC TCGGAGGCCA CAAGTAAATC AGCAATAAAG GAGCGAAAAC
  CTGTAGTGTG CTCCTCGGCC ATTCAGGAAG GCTTGGGAGC TATGCTCTGC GTGGCAGCAG
  C
  ACACAGTGGG CTTGGGCAAG ATGACAGGAA CCCCTGGGAG CCAGCTTAGA TACCCAGATC
  CCATCCTGAA GAGTTTAGTA GGCACAAGAG AAGTTGCTGA CTGAGACTAC ATCCAAGTTC
  AGCATTTAAC CATCAGTCCA CACAGAATAG GTTAAGTACA TTTAGGGTTC ACCGCGGGCT
  CATCAGGCAG GCCTGCCGCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147391692	ENSMUSSNP2976115	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51893748					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121404441 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563852	regulatory region 563852			1704 bp distal
Rr563853	regulatory region 563853			1983 bp distal
Rr563854	regulatory region 563854			221 bp proximal
Rr563855	regulatory region 563855			1800 bp proximal