rs51888610 SNP Detail

Summary

• ID
  rs51888610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84084626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTGCTT GGAGAGGGAT
  GATGAACCTT TTAGAGTTTC CCTGGGCAGG GTGGTAGGCA TATGGCCAGT TCTCTGGATG
  TATCTTCATA ATGGTTGGGA TGGTCCCCCA GACTGCTGAC TGGCAGCCTC TGAACCCTCG
  CTCCTGATCC TACCCTCTTC GCTGAATTTA TACCGTGGCT GAGAGAGGCC AAGGGCAAGT
  Y
  CTCCTCAATA TCCTTTCAGT TCCTACCCCC AAGTCTGGGA CCTCCGTGTC TCTGAAGAGC
  CCTGAGAAGG TGGTGAGGAG CCCCTGTTGG GTGGTATCTA CTCCTCTAAG CCTACAGAAC
  TTAGGGTCCT AGAGTCAGCA GGAGGAAGAA GGAGGAACAT CTAGCAGACC ACATCTTCCC
  TGCTCTGTGT AGGAACATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905303	NES15952957	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51888610					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905303	NES15952957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84084626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17624	CpG island 17624			1632 bp distal
Dysf	dysferlin			Intron
				Noncoding-Transcript-Variant
Gm15475	predicted gene 15475			637 bp upstream
Rr632995	regulatory region 632995			1000 bp distal
Tssr61719	transcription start site region 61719			636 bp upstream