rs51887471 SNP Detail

Summary

• ID
  rs51887471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55550630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTTTGGA GATAATTCAA
  ATCCACTCAG GTGATTTTTT AGGTCATCTT ACGAGATGGC CATGATTTTT CTCTTCAGAA
  TTTGGGCCTG ACAGTGGAGA GTTTTACTTT TTATTCTGGA AATGAATGTG AATGTGAATG
  TGGAAATAAA GGCTGACAGA TTCACTGAGG TATAAACTCA GATCAGTACT AAGTGAAAGC
  R
  GTAGTTCATT TCTGCAGCAG AACTAGCTGG TTATCTTACA ATGTGGTCAC CAAGTCTTGA
  CCACGTGGAG CTGGCACACC ATGGAATCTC TATACTATCA TGGCTTCACA TCGGAGAGGA
  TGCACTCTCT GTGAGTGCTT GTGTGGTACA TATATGTGTT TGTGTGGACA TGTGTGTGCA
  CATATGAGGG GAGGCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60413536	NES15908322	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51887471					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60413536	NES15908322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55550630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576982	regulatory region 576982			830 bp proximal