rs51886216 SNP Detail

Summary

• ID
  rs51886216
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41330973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCTATA TCAGCTGACT
  AGTGTCTGCT GATACCACGT TCATGTTCTT GCTCTAAAGA GTCATATCAG AAATATGTTT
  ATAGTTCTTG TTGGTGTGAT ACTAAATTCT CCTGGGCTGA ATGGCCTTAA AACCTAAACT
  GAGCTCAGGG GGTGATACTC CCAGGAAAGC TCAGGGAGGG CAAGGGGACA CACATACCTA
  W
  CCCGTTCCCT CTCTTTTGTC AACCTTCTTT CTCTCTTCCA TAGAACTACA TTTTGGACCG
  AAGTACATCC CCATTTGGAG ATGTTCTATT ACTTTTCCTA GGGAGATATG AACAGTTATC
  TACTCACCCT GGGCAGAAAA CCAATGTCAA ACCAAAGAAA AGATTCTACT CAGGTCCACT
  GTGCTGAACT GATGAGTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss60398373	NES15902919	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs51886216					SNP	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398373	NES15902919	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41330973 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	within coordinates
Rr575939	regulatory region 575939	694 bp distal
Rr575940	regulatory region 575940	281 bp proximal
Rr575941	regulatory region 575941	338 bp proximal
Rr575942	regulatory region 575942	441 bp proximal
Rr575943	regulatory region 575943	1278 bp proximal