rs51885438 SNP Detail

Summary

• ID
  rs51885438
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152498049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGAGATGGCT CAATAGACAC CTATGTTCAA CCTCCAAAAG
  CCATGTGTAT CAGTCACGGT TGTCAAGAGG ATAAGAACTT ATTGAATGAA CTGCGGGGGA
  A
  AGGGGGGGCT AGAATGGCTT ATAGGCTGTG GTCAAGCTAG CCTAACAATG GCTGTCTACC
  AAAGGAAGGT CCAAAAATCC AGTAGTTTTT CAGTACACAA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147970990	ENSMUSSNP1096113	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs51885438					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152498049 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1799 bp upstream
Rr567411	regulatory region 567411	1788 bp distal
Rr567412	regulatory region 567412	1287 bp distal
Rr567413	regulatory region 567413	254 bp distal
Rr567414	regulatory region 567414	1329 bp proximal
Rr567415	regulatory region 567415	1463 bp proximal
Tssr26849	transcription start site region 26849	1870 bp upstream
Tssr26850	transcription start site region 26850	1863 bp upstream
Tssr26851	transcription start site region 26851	1825 bp upstream
Tssr26852	transcription start site region 26852	1796 bp upstream