rs51884500 SNP Detail

Summary

• ID
  rs51884500
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAAATG AAAAGAAAAA
  AAATTGTAGA GTAAGCCAGT CCACTAGGAG AGATGTACAA TTTGATTCTA AGAGAGGCAA
  TTTTTTATTT TCTTTCCCTG TATTGAATGA TATAACGAGA GAAGGGAGCC TGTGAGAAAC
  TGTGCTTCTT TAATAGGATG AAGGAGCGAC ACTCTCTTTT AGAATCTAGA GAAAGTCCAC
  S
  GCTCAAAGCT GTGGTAAAAT TAACAATAAT TAACAAACTA TAATTATTTC CAGGCCCACC
  TTCAAAATAC ATTTTATATA TATCAGCATT TAATGTACGC CACTAGAATA CTGAACAAGG
  GTGTCATTTG ACTCATGGTA GCCAGTTGGG CCTCTCTGCA CCATTAATTT TCAAGCAATT
  CCTGAGGCAG ACAGATACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894251	NES15959626	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G		G	C	G		C
ss321812346	CHEV_6_67486715	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51884500					SNP	C	C	C	C	C	C	C	C	C	G	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894251	NES15959626	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	845 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1909 bp distal
Rr631669	regulatory region 631669	1466 bp distal
Rr631670	regulatory region 631670	915 bp distal
Rr631671	regulatory region 631671	645 bp distal
Rr631672	regulatory region 631672	742 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	925 bp upstream
Tssr1872	transcription start site region 1872	1940 bp upstream
Tssr61255	transcription start site region 61255	1976 bp upstream
Tssr61256	transcription start site region 61256	1495 bp upstream
Tssr61257	transcription start site region 61257	1024 bp upstream
Tssr61258	transcription start site region 61258	919 bp upstream
Tssr61259	transcription start site region 61259	851 bp upstream