rs51884300 SNP Detail

Summary

• ID
  rs51884300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125199367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTGAAG CAAGATATTA
  ATACATTTCT GTCATTCAGG CTTAGTTATC CACTTTCTTG TCAGTTTCAT AGTTAAAATC
  CTGTATATTT TGGAATAAGA AGAAGCTGGT GAAGACAGAA GTTACTAAAA TTACTTTAAT
  TTCACTAAAA CTAAGAGACA ATGAGTTTCT CCAAATGATT TTAATGAGTT GTTATTTTTC
  Y
  GGATCACAAC TATTTTAATT TGTTTTACTG GAATTGGGCC AATTAGCTAT AAGCAGAAAC
  TTAGGTAGTG ATGGATAATT TGTTTTGTTT GTTTCAATAA AGTTTAAGTC AGGAACATAA
  GACCCCTGAC CAGAAGGATC TCATGGTGAG AACCAGCATT CCCCCAAACA TTAGAATGTT
  TAATAAGAAA AGTAACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61078003	NES16589260	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51884300					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078003	NES16589260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125199367 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584608	regulatory region 584608	1632 bp distal
Rr584609	regulatory region 584609	1014 bp distal
Tssr31558	transcription start site region 31558	1587 bp downstream
Tssr31559	transcription start site region 31559	1378 bp downstream