rs51881511 SNP Detail

Summary

• ID
  rs51881511
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76869413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAAAGCGG GCTGAATTCT
  CCACTACAGA GGACCGCGGA GTCCTTGGCG CGACTACAAA GCTCCAGGCA GGGTTTGTAG
  CGTGCGGAAG GCGCATGCGG GGTCTGCTGG GTGGAAGACA AGCAGAAGTC TTTGGGATGC
  ATAGGGGCAG TAGGATAGGT GTGGGACACG GGCTAGTATC TGTGGGGTGT CAGGGTCCTT
  S
  TGTGAATACA GAGTATAGGT GAGGACCTCA GCGTTACGAG CCTCGGGGCA AGAGTCTGAG
  TGCTGGCCCG CATCCTGGGC TCATGGTTGC AGAACCGTCG GGAGGATAAA TCCCCAGGCT
  GCCTAGTGGG ACCTTTGAGC GCCATTTCTC TCCTTGTCAT TCCTCTGGAA CGGAGTTCTT
  TTGCTTTCAA AGTATCTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52375973	NES15271680	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51881511					SNP	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52375973	NES15271680	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76869413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			within coordinates
Rr434376	regulatory region 434376			885 bp distal
Rr434377	regulatory region 434377			905 bp distal
Rr434378	regulatory region 434378			301 bp distal
Rr434379	regulatory region 434379			562 bp distal
Rr434380	regulatory region 434380			415 bp distal
Rr434381	regulatory region 434381			within coordinates
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr94203	transcription start site region 94203			1324 bp downstream
Tssr94204	transcription start site region 94204			1302 bp downstream
Tssr94205	transcription start site region 94205			832 bp downstream
Tssr94206	transcription start site region 94206			321 bp downstream
Tssr94207	transcription start site region 94207			295 bp downstream
Tssr94208	transcription start site region 94208			278 bp downstream
Tssr94209	transcription start site region 94209			264 bp downstream