rs51880434 SNP Detail

Summary

• ID
  rs51880434
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172197289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG ACTGGAAGAG GCCTCTCCAC
  C
  GAGCCTGTGT TCTGTGCTTC AGGCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148314473	ENSMUSSNP1221420	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51880434					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172197289 () rs orientation: forward

Symbol	Name	Function Class
Aurka	aurora kinase A	821 bp downstream
Fam210b	family with sequence similarity 210, member B	mRNA-UTR
Rr571655	regulatory region 571655	1587 bp distal
Rr571656	regulatory region 571656	within coordinates
Rr571657	regulatory region 571657	239 bp proximal