rs51879152 SNP Detail

Summary

• ID
  rs51879152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97834616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACTGTG TGTGCATTGT
  TAGAGATGCC TGTGTGTTGC TTTATTTGTG CCTTAGGACC TGGGAAGCAT GGCTTAATGC
  TTTGAGTAAC AGTCAGCAGA CCTGGAGGAG GCCTTCATTT CTTGGGATCA GGGAACAGAG
  AGAACGTTCT GGAAATGAGC TTTGGCTAAG GAGGATCTTG TGTGCTGAGA GGCGATCTTC
  R
  AGGGGAGACA GGTCTGTGCG GTCCAGAGTA GATTTTTAAT TCAGAGCAGG CAGTGTCTCT
  GTGTTGGTAT GGCTACCCTC GATCCCACCA ACCTCCAGTG CAGAACTGTC AAATGAGCAG
  TGGAAGAAGA TGAAAGAAAG GCAGCAAGGC CAAAGCAGGC CTGCCCAGCC ATGCTGTTCT
  GTGGCGGGAC CTGACCGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60915470	NES16223119	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51879152					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915470	NES16223119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97834616 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635228	regulatory region 635228	1398 bp distal
Rr635229	regulatory region 635229	1004 bp distal
Rr635230	regulatory region 635230	16 bp proximal