rs51878576 SNP Detail

Summary

• ID
  rs51878576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18907916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCCTAC CACTCACTAC
  ATAACTGTGA TAAGCGAAGA GATTCTTGGA GAGGCTTGAA CATAGTATTC AGTGGTGTTT
  CTGCCTGGTT CTGATAGTTA AAACCTCTGG ATCCCTCAGA TGACTCTGAT TAGACTCTGT
  GGGAGACTAA TCAAAACCAA AACCTACAAT TAAGAGAAAG ATTTATTGTG TGTGGGATGG
  Y
  AGATGAAGGA GTGACATGGT AGAAAATTGG GAGAGAAGAA CCAGAAAACA TAGTATACAT
  GTATGAAATT GTGAAAGAAA GTGTTTACTA AGAAAAATTA TGTGAATTAA ATTCATTCAT
  TCACCTTATA AAGGAAAGGA TTTTCTATAT AGAATTCCAT TTTCTCAGGG AGGTCTCCTA
  TGAGACTAAC GTGTTCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60868418	NES15978395	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	T	C	C	C	C
ss133043334	ENSMUSSNP5013274	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51878576					SNP	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60868418	NES15978395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18907916 () rs orientation: forward

Symbol	Name	Function Class
Rr626961	regulatory region 626961	514 bp distal