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rs51878559 SNP Detail
Summary
  • ID
    rs51878559
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:156489256 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CAAAA ATTCAAACCT AAGCCTCAAC
    Y
    GATCAAGTTG GGTAACAAAC AAGAA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss145801519 ENSMUSSNP6474263 ENSEMBL ENSEMBL_Sanger f SNP T C C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs51878559 SNP T C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:156489256 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr421220 regulatory region 421220 923 bp distal
Rr421221 regulatory region 421221 442 bp distal
Rr421222 regulatory region 421222 322 bp proximal
Tor3a torsin family 3, member A Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory