rs51877942 SNP Detail

Summary

• ID
  rs51877942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71150773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCTGG AGCAGAGACT
  TTCACATTTA GGCAAACTTC AGTGTGCAAG AATGTCCTAC TCTCTAAAAC CGCCGTCCAG
  AAGCTGTAGT GCACCTTGGC TTCTTAGCTG CGGCAGGAAA GCACAGGACA GGCCTTCAAC
  AACAAAGGAG CCTCACAGCA AGCATGGCTT TGTAGGAATG ATTCTGAGGC ATGCGACAAC
  Y
  GGTTCCCTCC TGGGCAACCA GGCTTTGCAA GTAACTTTCT ATCCTAACAG ACCATACTTG
  CACATGCCGC AACAGTCAAA CTTACAACCT TGGAGAGTTT AAGATAAACT CAGCGTGGGC
  CCTTCTGAAA TACACAGCAG CTCACTGCTG GTGACCTCAC TACTGATGTC ATCATGAATT
  GATGCGGATA CCTCACTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60272820	NES15767896	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51877942					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60272820	NES15767896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71150773 () rs orientation: forward

Symbol	Name	Function Class
Gm41610	predicted gene, 41610	1690 bp upstream
Rr530331	regulatory region 530331	within coordinates
Rr530332	regulatory region 530332	90 bp proximal
Tgif1	TGFB-induced factor homeobox 1	427 bp downstream
Tssr149212	transcription start site region 149212	1678 bp upstream
Tssr149213	transcription start site region 149213	1270 bp upstream
Tssr149214	transcription start site region 149214	1020 bp downstream
Tssr149215	transcription start site region 149215	1252 bp downstream
Tssr149216	transcription start site region 149216	1387 bp downstream