rs51872951 SNP Detail

Summary

• ID
  rs51872951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151808481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAGCTCA AGGAGATCAT
  CAACCTTTCC GATTGCCTTT GCCTTGGCTT CAGAGGGCTG CGAGAAGAGA AAGTCAAGAT
  ATTGCATTCA CAAAATAAAA TCCCGTGGTG GTCGGAGCAC ACACAGCAGG AAGTAGCTGG
  CCCATTAGCT AAGTTTAGTG GACATATCCG GAATACAGCA TGACCTTATA GCTAAGTGTA
  R
  ACCAATACAG TAAATACTTA TAGTGTCAGC ATTAAATAGT ATGGATTTTT TTTCTTTAAG
  AAAAAGAAAG AAAAGGACGC CATTCCTAAG CTCCGAACTA CCTCGATAGG ACAAAGTTGT
  AGCATAAGTG ATCAGACAGT CGTTTTAAAG GGCGTGACAA GTACACAAGC TGGAAGCCTT
  CAGAAGGGCG TGATTTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136100757	ENSMUSSNP4939273	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321028020	CHEV_3_151765808	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51872951					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151808481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			1217 bp downstream
Rr587450	regulatory region 587450			1906 bp distal
Rr587451	regulatory region 587451			1173 bp distal
Rr587452	regulatory region 587452			1955 bp proximal