rs51870102 SNP Detail

Summary

• ID
  rs51870102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135672744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCAAAAA TTCCTGTAAG
  TGCCTGAGGG TCAAGCTGAC CTCAATGTCA GCCCAAGGTC AGGTCAGGAT TTAGCAAAGA
  TGTTTTTCTT GCTTCACTCT TATGGCCTCA CAGGTGTTCT ACATAGACTT ACATGTAGGC
  AAAACAGCCA TGCACATGAA GTAAATACAC TAGTAATAAT TTAAAACTTT GGTGGCCATC
  R
  TGGCACATAT CTTTAACTCC AGCACTTAGT AGGCAGAAGT AGAGGCAGGC AGATCTCTGA
  GTTTAGGTCA GCCTGGTCTA CATGGAGTAT ATGAGTACAC TATAGCTGTA CATATGGTTG
  TGAGCCTTCA TGTGGTTGTT GGAAATTTAA TTTTAGGACA TCTGCTCGCT CTAGTCGGCC
  ACCACTCACT CAGGCCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147554551	ENSMUSSNP4674000	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51870102					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135672744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15085	CpG island 15085	842 bp proximal
Gm69275	predicted gene, 69275	606 bp downstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	1032 bp upstream
Rr602209	regulatory region 602209	1610 bp distal
Rr602210	regulatory region 602210	1555 bp distal
Rr602211	regulatory region 602211	223 bp proximal
Rr602212	regulatory region 602212	934 bp proximal
Rr602213	regulatory region 602213	1026 bp proximal
Tssr39660	transcription start site region 39660	1014 bp upstream
Tssr44007	transcription start site region 44007	932 bp downstream