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rs51869389 SNP Detail
Summary
  • ID
    rs51869389
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:150019674 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGCAGCCCA AATTGTCTTG
    TGTTGGTAGA GCTGGCTGTG CTCAGGAAGC AGGTAGTGGC TTCAGTACCT TCACCCTCTC
    CAGTTCGAAG CCTAGCGTAT TAGTTCTGGA CTGGACGTAA GAGCATTCAT TGGTCCTTCC
    GGGCACCCAG CTCCAGCTTG GTGAACCCAC ACCTACACTA GGCACAGAAG AGGCTCAACA
    Y
    ATTCCCTCCA TGCACACGAG CATTCTCTTC AGGAGCAACA GCTAGTATGT ATGATCCTTC
    CAGACAGAGC AATCAACTGT GTGCCCTGCA CCCAGCCACC TCTCTATCTG TCAGCCTGGG
    AGGCCAGTGT CTGCGCTTTC TATGCACTGT CTTCTAAGAA AGAATGTGTC TGCACCGGAT
    CTGGCCACAC AAGCCCCTTG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
ss148043535 ENSMUSSNP4997878 ENSEMBL ENSEMBL_Sanger f SNP T T T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
rs51869389 SNP T T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:150019674 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr377412 regulatory region 377412 1163 bp upstream
Rr605111 regulatory region 605111 1027 bp distal
Rr605112 regulatory region 605112 1648 bp proximal
Spsb1 splA/ryanodine receptor domain and SOCS box containing 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory