rs51869389 SNP Detail

Summary

• ID
  rs51869389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150019674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGCCCA AATTGTCTTG
  TGTTGGTAGA GCTGGCTGTG CTCAGGAAGC AGGTAGTGGC TTCAGTACCT TCACCCTCTC
  CAGTTCGAAG CCTAGCGTAT TAGTTCTGGA CTGGACGTAA GAGCATTCAT TGGTCCTTCC
  GGGCACCCAG CTCCAGCTTG GTGAACCCAC ACCTACACTA GGCACAGAAG AGGCTCAACA
  Y
  ATTCCCTCCA TGCACACGAG CATTCTCTTC AGGAGCAACA GCTAGTATGT ATGATCCTTC
  CAGACAGAGC AATCAACTGT GTGCCCTGCA CCCAGCCACC TCTCTATCTG TCAGCCTGGG
  AGGCCAGTGT CTGCGCTTTC TATGCACTGT CTTCTAAGAA AGAATGTGTC TGCACCGGAT
  CTGGCCACAC AAGCCCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148043535	ENSMUSSNP4997878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51869389					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150019674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377412	regulatory region 377412			1163 bp upstream
Rr605111	regulatory region 605111			1027 bp distal
Rr605112	regulatory region 605112			1648 bp proximal
Spsb1	splA/ryanodine receptor domain and SOCS box containing 1			Intron
				Noncoding-Transcript-Variant