rs51868188 SNP Detail

Summary

• ID
  rs51868188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41361822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT CAGGCATCTA ACAAATGTGC
  R
  AAGTGTTGTT AATGATTCTC CATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60600943	NES16305535	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss144675445	ENSMUSSNP2489501	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322633641	CHEV_8_41994139	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51868188					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600943	NES16305535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41361822 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77029	transcription start site region 77029	1900 bp downstream
Tssr77030	transcription start site region 77030	874 bp downstream
Tssr77031	transcription start site region 77031	620 bp downstream
Tssr77032	transcription start site region 77032	365 bp downstream
Tssr77033	transcription start site region 77033	106 bp downstream
Tssr77034	transcription start site region 77034	43 bp downstream
Tssr77035	transcription start site region 77035	877 bp upstream