rs51867017 SNP Detail

Summary

• ID
  rs51867017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19528618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCCCAC GTTGTGATAT
  CTCATATGGG CACTTTGAGA TTCAGCTAAG TAGAGGGTGG GCTACTTGAA TTGCAAATGC
  ATGGGAGAGT GACTTATTCA GTCAGTCTAA GAGAGAAAAA CCTTTATCAA TTGTGTATGT
  TTAAAGGAGG GACAAAAATA AGAATCTGCA ACCTATGGTG GGCAGAAGTC TACAGTGGGT
  R
  CTACAGTCGT AATTTGTCTT CTGAGCACTG TGCATCAGTT TATGTTAAAT CCATTCAACA
  TTCGAGTCTC CCTAATAGTT TTATTTTTAT TTTTTACATT TCCCTACAGA CAAACGCACT
  GACTCAGACT TTTCTCCCAA GCCTACTATT TTCCTTCCTT CTGCTGCTGA AACAAATCTC
  CATAAGGCTG GGACCTACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626595	NES15515264	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51867017					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626595	NES15515264	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19528618 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	110 bp upstream
Tssr118549	transcription start site region 118549	1709 bp downstream
Tssr118550	transcription start site region 118550	989 bp downstream
Tssr118551	transcription start site region 118551	215 bp downstream
Tssr118552	transcription start site region 118552	1508 bp upstream
Tssr121589	transcription start site region 121589	1182 bp upstream
Tssr121590	transcription start site region 121590	100 bp upstream
Tssr121591	transcription start site region 121591	741 bp downstream
Tssr121592	transcription start site region 121592	1321 bp downstream