rs51864003 SNP Detail

Summary

• ID
  rs51864003
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27210051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGATCC TGGTGAAATA
  AGGCACAGTC CTCTATCTTT GAATCCCTAC TCCGGAGTGT GTATGTGGGG GGAGTTACTT
  GGAGGTCAAA AGAAAAGAAT CTGTTCTTTC CTTCCACTGT GGGTTTGAGG AATCTGGCTC
  AGGTCATCAG GTTGTATTGC AAGAGCTTTT ATACACTAGG TCCTCTCACT GGTACGTTAA
  K
  GGGGGGGGGG GGGAGTTGGG AAGGGTTAAG GGGTTTCTCG CCAGTTAAGA GCTCTTGTGG
  CTCTTGCAGA GGACCTGGCT TTGGTTTCGA GTATCCACAT GGTGGTTCAA AACCACCTCT
  AACTCACTCC AGTTCCAGGG GATCTTCCAT CTTATGCTTT CTTTTTTTCT GGCCAAATGT
  GAGGATTAGA CATGCAAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702358	ENSMUSSNP4346872	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51864003					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27210051 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Cpgi13018	CpG island 13018	1695 bp distal
Rr374716	regulatory region 374716	within coordinates
Rr574353	regulatory region 574353	1861 bp distal
Rr574354	regulatory region 574354	836 bp proximal
Tssr28601	transcription start site region 28601	1871 bp downstream
Tssr28602	transcription start site region 28602	1842 bp downstream