rs51863012 SNP Detail

Summary

• ID
  rs51863012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19321118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA GCTGATAGAA AAGAAAGAAC
  Y
  GGGATTCAGA AACACCATAA AAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134666400	ENSMUSSNP5474712	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320678296	CHEV_3_19166954	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51863012					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19321118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573967	regulatory region 573967			1833 bp distal
Tssr32691	transcription start site region 32691			1980 bp upstream
Tssr32692	transcription start site region 32692			1949 bp upstream
Tssr32693	transcription start site region 32693			1931 bp upstream
Tssr32694	transcription start site region 32694			1845 bp upstream