rs51860623 SNP Detail

Summary

• ID
  rs51860623
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152497348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCT GTGCCTAGTC TTGTTGTAAC
  A
  CATGTTCAGT TGATATCCCT GGGAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147970966	ENSMUSSNP1226226	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320562934	CHEV_2_152481164	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51860623					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152497348 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1098 bp upstream
Rr374088	regulatory region 374088	1453 bp downstream
Rr567410	regulatory region 567410	1857 bp distal
Rr567411	regulatory region 567411	1087 bp distal
Rr567412	regulatory region 567412	586 bp distal
Rr567413	regulatory region 567413	426 bp proximal
Tssr26849	transcription start site region 26849	1169 bp upstream
Tssr26850	transcription start site region 26850	1162 bp upstream
Tssr26851	transcription start site region 26851	1124 bp upstream
Tssr26852	transcription start site region 26852	1095 bp upstream