rs51859550 SNP Detail

Summary

• ID
  rs51859550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:81248804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCACTC GTGTCTGCCC ACTCAAGTCT GCCCACTCAT
  GTCTGCCCAC TCAAGTCTGC CCACTAGTGT CTGCCCACTC AAGTCTGCCC ACTCAAGTCT
  R
  CCCACTAGTG TCTGCACTTC TTATGGTATG GAGAATGAGC ATATTCAACA TACAATCCAA
  ATTTCAAGAC AAAATACTCT ATGGGCAAAC ACAACCACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146851887	ENSMUSSNP3549397	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321184795	CHEV_4_80976471	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51859550					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81248804 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mpdz	multiple PDZ domain crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr594211	regulatory region 594211			within coordinates
Rr594212	regulatory region 594212			866 bp distal
Rr594213	regulatory region 594213			810 bp distal
Rr594214	regulatory region 594214			614 bp distal
Rr594215	regulatory region 594215			544 bp distal
Rr594216	regulatory region 594216			460 bp distal
Rr594217	regulatory region 594217			404 bp distal
Rr594218	regulatory region 594218			334 bp distal
Rr594219	regulatory region 594219			292 bp distal
Rr594220	regulatory region 594220			180 bp distal
Rr594221	regulatory region 594221			124 bp distal
Rr594222	regulatory region 594222			1842 bp proximal