rs51857174 SNP Detail

Summary

• ID
  rs51857174
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34533668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGGATC GATCCCCAGC
  ACCAAGAGAA AGGGAGGAAG AGGCGTTTGC GATAGGAAGC AGGAGAGGAA AAGCGGTGAG
  ATCCAAATGC CCAATCCCAC CAATTTTCCT GATTCTACAC ACAAGCTCAG TCACTTGTAA
  CACCCTTTAA TTACCCACTA AAATAGTCAT TTTCAAGTTC AAAGCATGCA AAGCCAACTG
  K
  GGCCTGTGTT TGGGCCAGTG ATTGACAGTA GCCTTCTGGA GGTGGCACCC AGAGCTGTGC
  AGCTAAAGCT CCTCCTGCAT GCCTTTGTCA TTTGAATGCA TGAATTCAAG TTCTGTGAGC
  ACCACCTTTC CACTAAGGAT GTGTGATTCT CCAGCAGTCA TGAGTTCGTA ACTCTAAGGG
  AGTACGCGCT GAGGTCACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386321	NES15888831	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51857174					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386321	NES15888831	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34533668 () rs orientation: forward

Symbol	Name	Function Class
Gm42695	predicted gene 42695	1909 bp downstream
Rr575139	regulatory region 575139	1719 bp proximal