rs51855920 SNP Detail

Summary

• ID
  rs51855920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99568688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTCAGGA AGTCTTCATA
  TGGGGACTCA GATCCAAGAA GGGGAGGACT GCGTAAAGGA GACAGAACCT TCTCCACAGG
  AGACTCTGAG TCAGGCACAG GCTCATCCAT GGGGCTTAGG GACGCTCTCT CGTTCTCATC
  TTTGGCCTCA CTGAATTCAA AGCTCACTGG AACTGCCTGT GGCTTTTCAG TGACTTCTGT
  R
  GGTAGGTGAC TGGACTTCTC ATCGGTGGGA GATTGGTAGT AAGGTGTGTG GCCAGCACTG
  CCTGTCACAG ACTGGGATGG CGACACTACT TCCAGGGTCT TCTCCTCAGG ACTGGCACAA
  TGTTCTTCAA CTACTGCCTG GGTCACTCCA GGGGACACTG ACCTTGCTTC TCCCTCTGCT
  GACACTTTAA TCTCATTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52684834	NES15534682	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51855920					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684834	NES15534682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99568688 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr120833	transcription start site region 120833	1968 bp upstream
Tssr123698	transcription start site region 123698	1938 bp upstream
Tssr123699	transcription start site region 123699	1854 bp upstream
Tssr123700	transcription start site region 123700	1807 bp upstream
Tssr123701	transcription start site region 123701	1782 bp upstream
Tssr123702	transcription start site region 123702	1763 bp upstream
Tssr123703	transcription start site region 123703	1711 bp upstream
Tssr123704	transcription start site region 123704	1655 bp upstream
Tssr123705	transcription start site region 123705	1354 bp upstream
Tssr123706	transcription start site region 123706	1127 bp upstream
Tssr123707	transcription start site region 123707	935 bp upstream
Tssr123708	transcription start site region 123708	737 bp upstream
Tssr123709	transcription start site region 123709	565 bp upstream
Tssr123710	transcription start site region 123710	628 bp downstream
Tssr123711	transcription start site region 123711	834 bp downstream
Tssr123712	transcription start site region 123712	1064 bp downstream
Tssr123713	transcription start site region 123713	1279 bp downstream
Tssr123714	transcription start site region 123714	1319 bp downstream
Tssr123715	transcription start site region 123715	1352 bp downstream
Tssr123716	transcription start site region 123716	1416 bp downstream
Tssr123717	transcription start site region 123717	1821 bp downstream
Tssr123718	transcription start site region 123718	1915 bp downstream