rs51855716 SNP Detail

Summary

• ID
  rs51855716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71149439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTTTTA TCTGTATGAT
  TGAGTTTATT GTGTAGAGAC ATGTTTATTT GAACAGACTC ACAAAAGCAA AGGGGGAAAG
  TGAAGAGACC TTCTTCACCG GAGACTTGAA TAACTAAAGG CACGCGTTCT TGTCCCTACA
  ACCACTCAGA ATTAACAGTA TGGCTGGGTG GCTGGGTGGA GTAGAAAATG CCTTTGATTC
  Y
  AGAGCTTGGG AGGAAGAGAA CTCTGTGAGT TCAAGGCCAG CATGGTCTAT TTAGTGAGAC
  AAGACAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAACACACAA CAATTAAACT
  AACCATGACT GAAAATAAAA ACTGAAGAAA AAATACTAGA AAATACTAAT TAAACTAAAA
  TGAGGAAAAA ACGGAGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss145887957	ENSMUSSNP495572	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs51855716					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71149439 () rs orientation: forward

Symbol	Name	Function Class
Gm41610	predicted gene, 41610	356 bp upstream
Rr530331	regulatory region 530331	481 bp proximal
Rr530332	regulatory region 530332	1424 bp proximal
Tgif1	TGFB-induced factor homeobox 1	1761 bp downstream
Tssr149210	transcription start site region 149210	1565 bp upstream
Tssr149211	transcription start site region 149211	1488 bp upstream
Tssr149212	transcription start site region 149212	344 bp upstream
Tssr149213	transcription start site region 149213	62 bp downstream