rs51850600 SNP Detail

Summary

• ID
  rs51850600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138280898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC CGGCTCACAC TGGGCACTTG
  Y
  CCATGCCACC TGGCCCTTGC CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147650077	ENSMUSSNP5470677	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321374819	CHEV_4_138109502	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51850600					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138280898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15154	CpG island 15154	1190 bp proximal
Cpgi15155	CpG island 15155	1885 bp proximal
Rr602963	regulatory region 602963	within coordinates
Rr602964	regulatory region 602964	830 bp proximal
Rr602965	regulatory region 602965	1471 bp proximal
Rr602966	regulatory region 602966	1985 bp proximal