rs51849896 SNP Detail

Summary

• ID
  rs51849896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135717544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggggaaagg ctcccaacca caggtagggg
  cagctcctag ctcgctttcg ttccacagcc ttgattcaag ctagggcact ggtggttttc
  ttcatggttg cgccggtacc ttctacgcaa atgtcagcat agtctaaatg gtcaaCCATA
  Y
  AGACCAGGTC CTAACAGTCT ACACTGTGAG AAACACTACT TTATATTCTT CCACAGGATG
  ACCTTGAGGA GGAAGAAATT GTCTCAAAAA GGCCAACACC AGCTCCATGG TTAGCATTTA
  TGCTAGGAGA ATTAATTATG CTCTCCAGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60803589	NES16473375	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C		C	T	C		T
ss145546367	ENSMUSSNP3521766	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss319993392	CHEV_1_137686383	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51849896					SNP	T	T	C	C	C	C	C	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803589	NES16473375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135717544 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	1513 bp distal
Rr419277	regulatory region 419277	1806 bp distal
Rr419278	regulatory region 419278	656 bp distal
Rr419279	regulatory region 419279	838 bp distal
Rr419280	regulatory region 419280	within coordinates
Rr419281	regulatory region 419281	199 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron