rs51849366 SNP Detail

Summary

• ID
  rs51849366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120805713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT TGAACTCAGG ACCTTCAGGA
  R
  AGCAGTCAGT GCTCTTAACC GCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147374545	ENSMUSSNP2370159	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320480942	CHEV_2_120800968	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51849366					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120805713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	1710 bp proximal
Gm74862	predicted gene, 74862	1583 bp downstream
Rr563748	regulatory region 563748	1896 bp distal
Rr563749	regulatory region 563749	749 bp proximal
Rr563750	regulatory region 563750	972 bp proximal
Rr563751	regulatory region 563751	1283 bp proximal
Rr563752	regulatory region 563752	1295 bp proximal
Rr563753	regulatory region 563753	1805 bp proximal
Rr563754	regulatory region 563754	1811 bp proximal
Rr563755	regulatory region 563755	1877 bp proximal
Tmem62	transmembrane protein 62	1785 bp upstream
Tssr19722	transcription start site region 19722	1849 bp upstream
Tssr19723	transcription start site region 19723	1916 bp upstream