rs51848398 SNP Detail

Summary

• ID
  rs51848398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146560028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTCTTG CCGATGTCGC
  CGGTGTCAGA TTGCTAATGT ACAGATGGTA TGGATTTCCA AGTCCTGGCA GAGTGTTTGA
  TGGCACACAA GAACACAGCC ATTTAGTCCA TCACTTATAA AGCACTGGAC CAATTGATCT
  GGAGAGTTTT TGTTTTTGTT TTGTTGGTTA AAGGGGATAT TAATAGACTA AAGCCCATGG
  Y
  CTAAGTAAGG ACATAACGTG GGGACAAAGA TTTATATTTG CTGTTCAGAC AAAACCTGTA
  AGAGAAGCTG GGCCCTGTGT GTGGTCTTGT GATTTCTAGA ATGTCATTGT ATGTGTTATT
  TATATTCTGC ACCTTAGTGA GGCATATTGC AACCCAATCT GTTTGATCCC CAGAGGAACC
  TCAGAATTGA TATGAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61097587	NES16606794	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51848398					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097587	NES16606794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146560028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	1610 bp distal
Gm65628	predicted gene, 65628	1607 bp upstream
Rr587096	regulatory region 587096	1896 bp distal
Rr587097	regulatory region 587097	1618 bp distal
Rr587098	regulatory region 587098	1297 bp distal
Tssr32369	transcription start site region 32369	1835 bp downstream
Ttll7	tubulin tyrosine ligase-like family, member 7	Intron