rs51846959 SNP Detail

Summary

• ID
  rs51846959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT AGGCTGAGGG GTGCAAATAC
  Y
  TTCTAGTTCC TACATTTATA AATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320667834	CHEV_3_14874045	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51846959					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939105 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1664 bp downstream
Rr374551	regulatory region 374551	1639 bp upstream
Rr397608	regulatory region 397608	357 bp upstream
Rr573714	regulatory region 573714	424 bp proximal
Rr573715	regulatory region 573715	520 bp proximal
Rr573716	regulatory region 573716	1063 bp proximal
Tssr28459	transcription start site region 28459	1977 bp downstream
Tssr28460	transcription start site region 28460	1891 bp downstream
Tssr28461	transcription start site region 28461	1835 bp downstream
Tssr28462	transcription start site region 28462	1798 bp downstream
Tssr28463	transcription start site region 28463	1747 bp downstream
Tssr28464	transcription start site region 28464	1706 bp downstream
Tssr28465	transcription start site region 28465	1567 bp downstream
Tssr32654	transcription start site region 32654	1508 bp upstream