rs51845265 SNP Detail

Summary

• ID
  rs51845265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116455129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTAACTGA ACATATTCCG AAATCGTTCC ATATGTCCCA
  AGCTTTCTAA ATGATGGCAG TTGGACTAGG CCATGTTCTC AAATGTCAAA AGAAAGTTGT
  Y
  ATTTATTTCA AACTGATTTC AGCAAATCCT CCGCGGTGGC CTACTTACAT ATTTAGTGCT
  TTGCTAGCAT TGATCAAGGC TCCATTAAAC TACAAACAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436517	NES15939135	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51845265					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436517	NES15939135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116455129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13738	CpG island 13738	290 bp proximal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	1020 bp upstream
Rr583758	regulatory region 583758	within coordinates
Rr583759	regulatory region 583759	1187 bp proximal
Tssr31364	transcription start site region 31364	281 bp upstream
Tssr35324	transcription start site region 35324	612 bp downstream
Tssr35325	transcription start site region 35325	790 bp downstream
Tssr35326	transcription start site region 35326	1057 bp downstream
Tssr35327	transcription start site region 35327	1074 bp downstream
Tssr35328	transcription start site region 35328	1091 bp downstream
Tssr35329	transcription start site region 35329	1110 bp downstream
Tssr35330	transcription start site region 35330	1163 bp downstream