rs51844767 SNP Detail

Summary

• ID
  rs51844767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90568357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTCTAT TTTGTTATCT
  TTTATCATGG TGGATGCATA CCATTCCCTC TTACAAAAGA GACTTATTGG ACAGTGGATA
  AGGGCTTGTG AGGAACAGAG GAAAGAGGAT TAGATATATT GTTGGGGAGA TTGATGGAGG
  GCAGGATGGA GAATGTAGAT ACGACCTTAG CTGGGTAGTT AAAATAAGAA AGTTGTCAGG
  R
  CAGAGGCATT CCAAGCTGTG GAGGAAATAG ACGTTGTCAC ATCCCATCTT AAGGCACCTC
  TATTCCAGTG TCTCATGGAG GGCCTCTGTA CAATGGGGTC TGTAATGCAT GTACCTCATA
  GGATTGAGAG TTAAGAGGGT TTATGTAAGT AAAGCATTGG GGAAGTCCTC ACAATGGTAC
  ACACAACACA CACCCAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60424101	NES15930458	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs51844767					SNP	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424101	NES15930458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90568357 () rs orientation: forward

Symbol	Name	Function Class
Tssr946	transcription start site region 946	1060 bp downstream
Tssr30264	transcription start site region 30264	1390 bp downstream
Tssr34247	transcription start site region 34247	1614 bp upstream
Tssr34248	transcription start site region 34248	1602 bp upstream