rs51839856 SNP Detail

Summary

• ID
  rs51839856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95786985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAGAG GATTAAAAAA
  AAATCACATC TCGGGTGTAA GTGCCAGGTC TTGTAGCACC TCCAAGGACA GATTCACCTC
  TTCCTGAATA ATTGGGCTTG ATTCACATGA TGAGCTGACA TAAGCTTTGC AGTTCCAGGA
  CGGATCCTTC TCTTGATCTT GTTCTCACTG TTGTCCACTG AACAGCGGGA GAAGCTGAAG
  Y
  TCTCATTCCT GGTCATCCCC CTTGCCCCCC CCGCCCCCCC CCCCCGTGTT CCTGCAAGGA
  GAAGGCAGCT CTGTGCAAAT AGTCTCTAGA TTCTCAGGGC CCAGGAGCAG CCCCTTGGGG
  GTAGAGGAAT TCCATTACTC CACCTGGTGT CGCTTGCTCT CCTCTGGAGC CGGAAAGGGC
  CTCAGGAGAC AGCTGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147068359	ENSMUSSNP3257336	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51839856					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95786985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			477 bp upstream
Rr595486	regulatory region 595486			1709 bp distal
Rr595487	regulatory region 595487			1419 bp distal
Rr595488	regulatory region 595488			770 bp distal
Rr595489	regulatory region 595489			1263 bp distal
Rr595490	regulatory region 595490			1662 bp proximal