rs51830181 SNP Detail

Summary

• ID
  rs51830181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148020878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGC TGTCCCCTCC TCTGCCCGCA
  R
  CACAAACCTA GGAATCCCGA CCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147987394	ENSMUSSNP6271538	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321415846	CHEV_4_147310530	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51830181					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148020878 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15284	CpG island 15284			within coordinates
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1			Intron
				Noncoding-Transcript-Variant
Rr377387	regulatory region 377387			856 bp upstream
Rr604526	regulatory region 604526			294 bp proximal
Rr604527	regulatory region 604527			981 bp proximal
Rr604528	regulatory region 604528			1636 bp proximal
Tssr40234	transcription start site region 40234			392 bp upstream
Tssr44566	transcription start site region 44566			292 bp downstream
Tssr44567	transcription start site region 44567			340 bp downstream