rs51829615 SNP Detail

Summary

• ID
  rs51829615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153300270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAAGGTT ACGTCACTTG
  CTGTCTGCAA TTGTTCTTAC CCTTGGGGAA AATACTGCCC CCAATAAGAA TGTTCTTGAT
  ATCAAAGCTT CTTAATATTT GGGCTGTAAT TCATATGAAG ACATGAAAAA TCTGGCAACA
  GTAAAAGATT TCTAAACATA AAAAAAAAAA AAAAACCCAA AAACTAATTC AAAACCAAGC
  R
  TGTACTGCAC CCAAGGTGTT TGGGGCAGTA CTTGCCTGTG CTGTATCTAG TGGCTTCTTG
  GCAGCCTTGG GGTGGCGCAC ACAGCGCCTG CACTTTGTCC CATGTGTACA GCCATGCCAA
  GTGCCAACAG ATGTCGCTGG AAACCCCTCC ACTCAGCTTC TAGGCCGCCA CGCCTACATT
  ATGAATTTCT TTACAATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136109451	ENSMUSSNP5650200	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51829615					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153300270 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Gm52633	predicted gene, 52633			1469 bp upstream
Rr587708	regulatory region 587708			120 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant