rs51829037 SNP Detail

Summary

• ID
  rs51829037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:55981499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCAAGGGGGT GGGGGGTGGG GTGGACGTGG GAGGACCAAC
  AAGAGGCTGT GCCCCGACTC TGGGCATATT GAAGAATGAG ACTAGCATAA ATTCTCTGTT
  Y
  TTCCACAGCC CCCTCCCCTC CTCACTCACT GTCCTACTCT AAGCAGGGGC TTCCGGTATG
  CACATGCAGA TACACACCGG GAGGAAAGCT ACAATCTTTC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149038596	ENSMUSSNP4639491	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51829037					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55981499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5690	CpG island 5690	1579 bp distal
Cpgi5691	CpG island 5691	1804 bp proximal
Gm28760	predicted gene 28760	1674 bp downstream
Gm47071	predicted gene, 47071	within coordinates
Pitx1	paired-like homeodomain transcription factor 1	Intron
Rr480568	regulatory region 480568	1771 bp distal
Rr480569	regulatory region 480569	881 bp distal