rs51825996 SNP Detail

Summary

• ID
  rs51825996
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGTGCA CGTGGAGGCC
  CCTGACTCTG CCAGAGCCAG AGCCAGTGGG CGTGGCTAGG CGTAGGGCAT AGATGCGTGG
  AATCTAGGGC AGTGCAGCTA GGGCCCTAAT GGTCTGTACT CTCTGTACTC GCAGAGGAGG
  TTGTGGGGGG AGAGGACAAC GCACTGAGCT AGAAGGTTGT AGGGGAGAGA GAGTGCCTTG
  K
  GAAGGGCCCA AGTGGTAAGG GCTCGGGCTA TGCTGAGTTC TTTGCCAGCT CTCCTCAGCT
  CCCTGGAGGT CTGGAGGCTT GTCTGCTGGT TTGATCTAGG AGGTCCCATC TTTACCATTT
  CGCCATCCCG GGCCCCTTTG AGTTGCTTGG CTCCTCATTC AGTACCACAG CAGCACGGAT
  GCTGCTCTCT GCTGAGACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135467981	ENSMUSSNP2882533	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51825996					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656126 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	194 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	within coordinates
Rr579536	regulatory region 579536	175 bp proximal
Rr579537	regulatory region 579537	383 bp proximal
Tssr33946	transcription start site region 33946	264 bp upstream
Tssr33947	transcription start site region 33947	251 bp upstream
Tssr33948	transcription start site region 33948	221 bp upstream
Tssr33949	transcription start site region 33949	204 bp upstream
Tssr33950	transcription start site region 33950	189 bp upstream