rs51819038 SNP Detail

Summary

• ID
  rs51819038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20561946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAATAA GGCTATTATA
  AATAAGGATC ATATGTCCTT ATTGGAGCAT CTTCTGGGTA TATGCCCAGG AGTGGCATTG
  CTGGATCCTC AGATAGTACT ATGTCCAATA TTCTGAGGAA CCTCCAAACT GATTTCCAGA
  GTGGTTGTAC CAACTTGTAA TCCCACCAAC TATGGAGGAG TGTCCCTCTT TCTCCACAAC
  Y
  TTGTCAGTAT CTGCTGTCAC CTGAGTTTTT GATCTTAGCC ATTCTGACTG GTGTGAGGTG
  GAATCTCAGG GTTGTTTTGA GTTGCATTTC CCTGATGACT AAGGATGTTG AAAGTTTTCT
  TTAGGTGTTT CTCAGCCATT CAGTATTCCT CAGTTGAGAA TTCTTTGTTT AGCTCCCTAC
  CCCATTTTTA ATAGGGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134672210	ENSMUSSNP3277312	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51819038					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20561946 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1576 bp upstream
Rr574081	regulatory region 574081	1477 bp proximal
Rr574082	regulatory region 574082	1606 bp proximal
Tssr32748	transcription start site region 32748	1572 bp upstream
Tssr32749	transcription start site region 32749	1557 bp upstream