rs51818787 SNP Detail

Summary

• ID
  rs51818787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116761602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCGAGAA TTACTCTGAT GCGTGCCTTC GCTACTTTTC
  TTCTGTTTTA ATACTTCGCA TATATATATA TGCATACATA CATACACCAA GCTTTGCTTT
  R
  ATTCAGTTAG GTTTGTCTGG AATATACTTT GACACATGAA TAAAAATGTT TCCGATTTTC
  TTCCTTTTGA TCTACCTCTT TAAAAAAAAA CTTTTGGGGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60435454	NES15933251	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs51818787					SNP	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435454	NES15933251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116761602 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			314 bp upstream
Cpgi13743	CpG island 13743			640 bp proximal
Gm52613	predicted gene, 52613			within coordinates
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			1318 bp distal
Rr583815	regulatory region 583815			749 bp distal
Rr583816	regulatory region 583816			1146 bp distal
Rr583817	regulatory region 583817			224 bp proximal
Rr583818	regulatory region 583818			895 bp proximal
Tssr35360	transcription start site region 35360			585 bp downstream
Tssr35361	transcription start site region 35361			610 bp downstream
Tssr35362	transcription start site region 35362			675 bp downstream
Tssr35363	transcription start site region 35363			723 bp downstream
Tssr35364	transcription start site region 35364			759 bp downstream
Tssr35365	transcription start site region 35365			819 bp downstream
Tssr35366	transcription start site region 35366			837 bp downstream
Tssr35367	transcription start site region 35367			874 bp downstream
Tssr35368	transcription start site region 35368			975 bp downstream
Tssr35369	transcription start site region 35369			1016 bp downstream
Tssr35370	transcription start site region 35370			1059 bp downstream
Tssr35371	transcription start site region 35371			1561 bp downstream