rs51816009 SNP Detail

Summary

• ID
  rs51816009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77387760 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T TTGAAGGTCC TGAGTTCAAA TCCCAGCAAC CACATGGTGG
  CTCACAACCA TCTGTAATGA GATCTGATAC CCTTTTCTGG TGTTGTCTGA AGAGAGCTAC
  R
  GTGTACTTAG ATATAATAAT AAATATATCT TTAGACAGGA GTGAGCAGAG GTCCTGAATT
  CAGATTCCCA GTAACCACAT GATGGCTCAC AACCATCAGT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149227893	ENSMUSSNP528244	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51816009					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77387760 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94243	transcription start site region 94243			1419 bp downstream
Tssr94244	transcription start site region 94244			1010 bp downstream
Tssr94245	transcription start site region 94245			1929 bp upstream