rs51813278 SNP Detail

Summary

• ID
  rs51813278
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8632191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGATTTGAC ATACTGAGAC
  AAGAGAGAAC CTCAAGCCAT CATGATGGAG GTCATATGAG GATACTAGAT GGGACAAGAC
  TGATAGAGAC AGATTAGTTT ATCTCAGTTC TTGATAGAGT GTGTAATGAG ATCTTAAAGA
  AATCCCCAGT GAAAATATGT CACACACTTA CTTCCCCTTC CTCCTAACCT CTTGCAGAGG
  W
  CTGAGAGGGT CCCCAGGGAG TAATCACAGA CTTGCAGTTA AGAGCTAAGC CAGCCGACTG
  CTCTTTGAGG AGACCGACCC TCAGATCCTC CAGGTCTCCA CTAGGACTAA AACCAGGTGC
  AAATTATTTG CACAGCACTT AAAAGAGCAT CATAGGAACA CTTTCTGATG ATAATGAGAC
  AGACGTTTCC TCTAATGTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132972912	ENSMUSSNP4185131	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51813278					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8632191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			within coordinates
Rr626420	regulatory region 626420			644 bp distal
Rr626421	regulatory region 626421			within coordinates