rs51812815 SNP Detail

Summary

• ID
  rs51812815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACGTTTT TGGACGTTGA
  AAGTTACTTT TTAGTTTGGT CTGCGTTGGT TTGTATACTT TTCTTTCGCT GATGAGGGAA
  TAAACTTCCA TTGTAAAATG GGACAGCTAC AGGATGGGTG GAGGTTAGAG GGCACATAGG
  AAAGATTGTA CTCCAGTTTC CACCTAGAAG GGCAGAAAGA TGAGTCATTG CGGTCCGGAG
  R
  TGAACTACTG ATCACTGGGA GACTGATTGC CCCCCGTCTC TCAGAAGCTT TTACAAGTAA
  AACATAATTA CTGCAAAATT ATCATAGTCT ACCTGGAGCA GCCCACCTCG GCTGATGACC
  CTCCTAAATT TAAAGCGTTG CCATTGACGA CTTTTTTTTT TTTCAGGGTA TTGTACAGAA
  TCTTCTGGGT ACAGGGATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss136828256	ENSMUSSNP4805268	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss323100052	CHEV_9_95308745	CHEVERUD	SCREENING_POP	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs51812815					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290379 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1056 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684790	regulatory region 684790	961 bp distal
Rr684791	regulatory region 684791	42 bp distal
Tssr86547	transcription start site region 86547	887 bp downstream
Tssr90904	transcription start site region 90904	1207 bp upstream
Tssr90905	transcription start site region 90905	1135 bp upstream
Tssr90906	transcription start site region 90906	1114 bp upstream
Tssr90907	transcription start site region 90907	1087 bp upstream
Tssr90908	transcription start site region 90908	1050 bp upstream
Tssr90909	transcription start site region 90909	1027 bp upstream
Tssr90910	transcription start site region 90910	993 bp upstream
Tssr90911	transcription start site region 90911	965 bp upstream
Tssr90912	transcription start site region 90912	547 bp upstream