rs51808581 SNP Detail

Summary

• ID
  rs51808581
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACCCCTA CAATTTTTTA AACACGCGTG TGTATAGGAT
  GTACATGTGA CACAGCACTG ATATGGACAT CAGAGGACAA CCTGAAGAAG TTGTCTCTTC
  S
  CTGTGTGGAT TCTGGAGATA GAGAGAGGTC TGCTGTTTGG TGTAGTGAGC GTCAAGGACC
  TTCCTGGACT AAGCCATCTC TTAGTCCCAT CAAATTTCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136828271	ENSMUSSNP382488	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323100056	CHEV_9_95309593	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51808581					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291227 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1904 bp upstream
Gm8449	predicted gene 8449	1495 bp downstream
Gm35915	predicted gene, 35915	620 bp downstream
Gm37805	predicted gene, 37805	606 bp downstream
Rr684790	regulatory region 684790	1809 bp distal
Rr684791	regulatory region 684791	890 bp distal
Tssr86547	transcription start site region 86547	1735 bp downstream
Tssr90905	transcription start site region 90905	1983 bp upstream
Tssr90906	transcription start site region 90906	1962 bp upstream
Tssr90907	transcription start site region 90907	1935 bp upstream
Tssr90908	transcription start site region 90908	1898 bp upstream
Tssr90909	transcription start site region 90909	1875 bp upstream
Tssr90910	transcription start site region 90910	1841 bp upstream
Tssr90911	transcription start site region 90911	1813 bp upstream
Tssr90912	transcription start site region 90912	1395 bp upstream