rs51807259 SNP Detail

Summary

• ID
  rs51807259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122212846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTGTTCC CTGTGGAGCC TTCTGTCTTA TCCATCTGAT
  CCGAAGGTGT TCCTTACATA GTTTCTATAC ATTTCCTTTA TCGGCTGCAT GAATTGCGTA
  K
  AGGAGCTCTT AATGACAATT ACGTTAACAA GCGGGTTTCC TTTGGCGTTA GTGCTTCGTG
  TATTTAATTA AGGAATCTTT ACAGCCCTTT TTTTTTATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741303	ENSMUSSNP4335423	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320911471	CHEV_3_122122115	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51807259					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122212846 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	560 bp upstream
Cpgi13768	CpG island 13768	356 bp proximal
Rr397985	regulatory region 397985	384 bp upstream
Rr584325	regulatory region 584325	within coordinates
Rr584326	regulatory region 584326	144 bp proximal
Rr584327	regulatory region 584327	592 bp proximal
Tssr31494	transcription start site region 31494	542 bp upstream
Tssr31495	transcription start site region 31495	575 bp upstream
Tssr31496	transcription start site region 31496	596 bp upstream
Tssr31497	transcription start site region 31497	669 bp upstream
Tssr31498	transcription start site region 31498	788 bp upstream