rs51806722 SNP Detail

Summary

• ID
  rs51806722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116723476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATTAGG AAATGTGTGG
  TGAGCTACTC TGGTAGAGTG GAAAACGACT AAAAGTGGTA GATCTGGATT CTAGAGTCTT
  TGCTACACAT TATAGTCAAT TTCTTTAACC TCCGAAAAAC TCAGCTTTGC AATGTGCATG
  ATGAGAATAA CAATACCTGC CTTGTTTTGT TCAGATGTTA GGTGAAACTA GGAGAGATGA
  Y
  GATGCTCATG TAAGGCAGTT GGACATGGCA GGTGACAGGT ATGAGCTTGT TCTGGAGAGG
  AATCTCAAGG CTTTCCATAA CACATTCTAC CTTTGTCCCC CTTCACTGCC CACCTAAGGG
  CTCTCTTCCC AATATGTGTG TTAGACACGG GGTGTAAAGG GGAACCTGGG TAGAAATGAA
  GGAGGTTCAA AAACTCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss60435612	NES15934404	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs51806722					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435612	NES15934404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116723476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583806	regulatory region 583806			429 bp distal