rs51803628 SNP Detail

Summary

• ID
  rs51803628
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129025241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AATCTAAGCT TACCTTTTGC TAAATAACTG TGTACAGCTG
  CGCAGAAGGG AGTGGTGGGA AGGACAAGCC AGCCTGGGTA CAGTCGATGC CCCCCCCCCC
  C
  CCCCCCCCGG CCATGAAGCA ATGGAAAATA AAGCTGGTCT GGATGGAAGG CACAGTCGTG
  GAAAGCCAGC CCTGGCTAGA CAAAGCCTTC TGGATTCTGT C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147582218	ENSMUSSNP5482959	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs51803628					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129025241 () rs orientation: forward

Symbol	Name	Function Class
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	within coordinates
Rr564860	regulatory region 564860	1596 bp distal
Rr564861	regulatory region 564861	1338 bp distal
Rr564862	regulatory region 564862	205 bp distal
Rr564863	regulatory region 564863	39 bp proximal
Rr564864	regulatory region 564864	482 bp proximal
Tssr26190	transcription start site region 26190	456 bp downstream