rs51800446 SNP Detail

Summary

• ID
  rs51800446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138131626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA CCACACCCAG CCTTTACCTG
  Y
  ATGCTTGTCC AACAGACACT TTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147644684	ENSMUSSNP6162091	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321373171	CHEV_4_137960230	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51800446					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138131626 () rs orientation: forward

Symbol	Name	Function Class
Rr602910	regulatory region 602910	587 bp proximal
Rr602911	regulatory region 602911	678 bp proximal