rs51798797 SNP Detail

Summary

• ID
  rs51798797
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTTGGT TTGGGCTCAA
  TTTTTGAGAC CCGTCATTCT CCTCCACTTG AGAATGACTC AGCACGACCT ACCAACCTGA
  TTGAGACTGC CTCTGCCTAG CTACTGCTGA TGTAGGCCCC GTGAGATAAC CCCACACCCC
  TCGTCATTTC ACTCCATCAC ATATGTCATC TCACCCCATA TCCCTACCCC CACCTCCTTG
  M
  CTTCTCTATA TAAGCAAGTA TCTAGTTTAA TAAAGTGAGT TTCTGCTTTG ACAACACTCC
  TGGCCCAGGT GTGTTTGTTT GGGGCCATCA ACACTCACCA TCCCACTCAG CCTCAGAGAG
  GCTGAAGTGA GCTCTCTCCT CTCGCCTGGA CCTGCTAGCA GAGAGCCAAC AGGCTTTTGA
  ACTGATTAGA TATGGAGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671192	ENSMUSSNP2119507	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51798797					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947120 () rs orientation: forward

Symbol	Name	Function Class
Gm64742	predicted gene, 64742	1900 bp upstream
Rr574033	regulatory region 574033	1410 bp proximal
Rr574034	regulatory region 574034	1841 bp proximal
Rr574035	regulatory region 574035	1911 bp proximal
Tssr28531	transcription start site region 28531	1899 bp upstream
Tssr28532	transcription start site region 28532	1947 bp upstream