rs51789020 SNP Detail

Summary

• ID
  rs51789020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95184267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGAGTCA CTAGGAATAG
  GAGCTCACTT ACAAACAAAA ACAAACAGAA AACAGGCTTT CCTTTCCCCC CTTTCCCTTG
  CTTATTTTTG GTTGTTTTCA AGACATGGTT TTACGCCTAG CTCCTTGGTT TTTTGTTTAT
  TTGTTTACTT TTTCCAAGAC AGGGTTTCTC CGTGTAGCCC TGGCTGTCCT GGAACTCATT
  S
  GGTACACCTG CCTCTGCCTG GGATTAAGTG ACAGGATTAA TGGTGTGTGT CACCAGGTCA
  CCAGTACCAG TCCCTTTCTG GTCTTCTTTT TACACAGCCC AGGTCTAGGA ACCTATTCTG
  TAGTCCAGGG ATCTTTCCAA CTCAACCTCA GCCACTAAGC CCAGCTATGT AGATTTCCTT
  TCAGTGGAAC ACACTATTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135510467	ENSMUSSNP4121269	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51789020					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95184267 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580884	regulatory region 580884	1 bp proximal