rs51787001 SNP Detail

Summary

• ID
  rs51787001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145190671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCTCAGA GTCAGCCCGC CTTCCCTGAC CTCCGTGACC
  CCACTGGCCC CGCCCACTCC CGTCGACGTG ACTCCCGCCG TGAGGTAAAC GCCAGTGGAG
  Y
  AGAGTTCCGC GGAAGAGGAT AGGGAGGCGA GCGGCGCGGC TGGGCCGGCT CGGGTCGGTG
  GCGGAGCCCT CGCGCGTGAG AGCTTCCGGG CGCGTCTCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147859530	ENSMUSSNP196750	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51787001					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145190671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	within coordinates
Gm65281	predicted gene, 65281	103 bp upstream
Rr377358	regulatory region 377358	within coordinates
Rr604377	regulatory region 604377	within coordinates
Rr604378	regulatory region 604378	114 bp proximal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	197 bp upstream